Pharmacies have a terrible reputation; over 52% of customers in the United States do not believe their pharmacy does not prioritize their health. Despite this, the pharmacy industry is projected to grow by 6.7% in 2023, reaching $460 billion in total revenue. This growth presents both opportunities and challenges for pharmacy owners. So, if you own or work for a pharmacy, there is a significant competitive advantage to building trust and long-lasting relationships with your customers. This article highlights the top 5 pharmacy POS systems that help businesses streamline inventory tracking, automate prescriptions, and improve customer interactions.
Features to Look for in Pharmacy POS System
Drugstores pose unique challenges to customer satisfaction, many of which cannot be solved with traditional POS systems. There are some key functionalities to look out for when choosing a Pharmacy POS System:
- Customer Management & Prescription Tracking: Regular customers expect a hassle-free experience when refilling prescriptions. A pharmacy POS system should store medication preferences, purchase history, and insurance details. This helps pharmacists retrieve past orders quickly and reduce errors in prescription processing.
- Self-Checkout Capabilities for Efficiency: Many customers believe they spend too much time in pharmacies. A self-checkout system can shorten wait times by allowing customers to scan medications and process payments independently. This is especially useful for over-the-counter purchases and pre-packaged refills.
- Omnichannel Integration for Multi-Location Pharmacies: Even with the rise of mail-order drug services, most customers prefer in-store pickups. A pharmacy POS should sync inventory across multiple locations and support online and offline transactions. This helps businesses maintain accurate stock levels and provide a consistent experience across all sales channels.
- Mobile & Offline Functionality for Prescription Deliveries: Some pharmacies offer home deliveries for medications, requiring a POS system that works beyond the store counter. A mobile-friendly POS with offline capabilities allows staff to process orders and payments remotely, even when internet access is unreliable.
Top 5 Pharmacy POS Systems
1. ConnectPOS: A Cutting-edge Pharmacy POS
ConnectPOS is a cloud-based POS system designed to improve pharmacy operations and customer satisfaction. Unlike traditional POS systems, it optimizes checkout speed, automates inventory management, and centralizes prescription tracking across multiple sales channels.
Product and order management
Pharmacy staff spend 16% of their time on data entry and order processing, which slows down service. ConnectPOS automates inventory updates and order syncing across multiple outlets. Customers can place orders online and pick them up in-store, while the system instantly logs purchases and adjusts inventory levels.
Customer Management
Loyalty programs play a key role in retaining pharmacy customers. ConnectPOS integrates with reliable third-party extensions such as Aheadworks and Amasty to support customized rewards programs. The group pricing feature allows pharmacies to offer tiered pricing for different customer groups, improving affordability. Since customer data, including prescriptions and preferences, syncs across all sales channels, patients get a consistent experience whether they shop online or in-store.
PWA Consumer App
Customers who interact with pharmacies through an app report 23% higher satisfaction than those who don’t. ConnectPOS offers a Progressive Web App (PWA) that works on any device. Customers can self-checkout using their preferred payment method, reducing wait times and improving service efficiency.

2. DataScan: A POS Designed for Wholesalers & Sales Tracking
With over 35 years in the pharmacy industry, DataScan offers a POS system tailored for wholesalers and businesses that prioritize pricing analysis and financial insights.
Wholesale Purchase Management & Price Comparisons
Many pharmacies still rely on in-store purchases, despite the rise of mail-order drug services. DataScan’s system compares prices from multiple wholesalers, helping pharmacies secure the best deals. It also tracks previous purchases and supplier performance, making it easier to optimize future orders.
Financial Reporting & End-of-Day Reconciliation
Tracking financial performance is key to maintaining a profitable pharmacy. DataScan generates detailed sales reports and provides end-of-day reconciliation statements, keeping financial records accurate.
3. PrimeRx: Efficiency drug system
PrimeRx is an all-in-one POS system designed for independent and multi-store pharmacies. It simplifies prescription management, invoicing, and insurance claims, helping businesses minimize manual errors.
Automated Refill Management
The Patient Status Board keeps customers informed while they wait. They can see their position in line and get real-time updates on prescription processing times. This reduces the need for frequent check-ins with pharmacists, making the experience smoother.
Real-Time Customer Updates & Queue Management
The Patient Status Board is a standout feature of PrimeRx. Using this board, you may converse with your customers while they await their prescriptions.
Customers can see where they are in line and how long they must wait. They will not have to disturb the pharmacist or the technician and will not be in the dark.
4. PioneerRx: Global pharmacy POS
PioneerRx is one of the most widely used pharmacy POS systems, providing tools that help small pharmacies compete with larger chains.
Inventory Control with Shelf Labeling
Rather than using individual price tags, PioneerRx generates shelf labels that display pricing and stock levels. This helps staff quickly identify low-stock items and prevents misplaced medications.
Data & Financial Reporting for Compliance
PioneerRx allows pharmacies to share prescription data with pharmaceutical companies. Businesses can also generate financial reports and adjust labeling for better record-keeping.
5. BestRx: A feature-rich POS
BestRx provides a straightforward pharmacy POS solution, helping businesses manage prescriptions, process digital signatures, and organize documents efficiently.
Electronic Signature Capture for Prescriptions & Deliveries
BestRx includes a built-in signature pad for capturing electronic signatures on prescriptions, HIPAA agreements, and payments. These records are securely stored and retrievable for audits.
Document Management & Cloud Storage
Pharmacies handle large volumes of paperwork, which can be difficult to manage. BestRx allows staff to scan and store documents directly within the system. All files are kept on a HIPAA-compliant cloud server, making retrieval quick and secure.
Common Challenges in Pharmacy POS Systems & How to Solve Them
Even with a well-designed pharmacy POS, businesses often encounter operational hurdles.
1. Regulatory Compliance & Data Security
Problem: Pharmacies must follow strict regulations related to patient data protection, prescription tracking, and payment security. Failure to comply can lead to legal penalties and reputational damage.
Solution: A pharmacy POS with built-in security measures helps businesses stay compliant with industry regulations. Look for features like data encryption, role-based user access, and automatic audit tracking.
2. Managing Multi-Location Inventory
Problem: Pharmacies with multiple locations often struggle with inconsistent stock levels. If inventory data is not updated in real-time, customers may arrive for out-of-stock prescriptions.
Solution: A POS system with centralized inventory management prevents stock discrepancies.
3. Prescription Refill Delays & Customer Frustration
Problem: Customers expect quick and accurate prescription refills. Pharmacies relying on manual prescription tracking often experience delayed processing, errors, and miscommunications.
Solution: Automated refill management can speed up the process by sending refill reminders via text or email, so pharmacies and reduce missed prescriptions and manual errors.
4. Slow Checkout & Long Wait Times
Problem: Pharmacies often experience high traffic during peak hours, leading to long lines and frustrated customers.
Solution: A POS with self-checkout options can help. A POS offers a self-checkout option that lets customers scan their medications and complete payments independently.
5. Insurance Processing & Payment Flexibility
Problem: Processing insurance claims manually can be time-consuming and error-prone. Customers may expect multiple payment options, including credit cards, digital wallets, and insurance co-pays.
Solution: A pharmacy POS with insurance billing integration simplifies the process. POS systems that support real-time insurance verification would be useful when customers can pay using multiple methods in one transaction.
Choosing Your Perfect Pharmacy POS System
Finding the right pharmacy POS system depends on your business model, operational needs, and customer service goals. Each system reviewed in this article provides unique advantages, whether you need automated prescription management, multi-location inventory tracking, or wholesale pricing tools.
Want to try a pharmacy POS before making a decision? ConnectPOS provides a 14-day free trial, allowing businesses to explore its features without upfront hardware or development costs. Reach out for a personalized demo with ConnectPOS now!
ConnectPOS is a all-in-one point of sale solution tailored to meet your eCommerce POS needs, streamline business operations, boost sales, and enhance customer experience in diverse industries. We offer custom POS with features, pricing, and plans to suit your unique business requirements.